Forensic Science International
Volume 157, Issue 1 , Pages 23-35 , 10 February 2006

Development of multiplex PCRs for evolutionary and forensic applications of 37 human Y chromosome SNPs

Received 30 November 2004 ,Revised 8 March 2005 ,Accepted 22 March 2005.

References 

  1. The Y Chromosome Consortium, A nomenclature system for the tree of human Y-chromosomal binary haplogroups, Genome Res. 12 (2002) 339–348.
  2. Underhill PA, Passarino G, Lin AA, Shen P, Mirazon Lahr M, Foley RA, et al. The phylogeography of Y chromosome binary haplotypes and the origins of modern human populations. Ann. Hum. Genet. 2001;65:43–62
  3. Jobling MA, Tyler-Smith C. The human Y chromosome: an evolutionary marker comes of age. Nat. Rev. Genet. 2003;4:598–612
  4. Jobling MA. Y-chromosomal SNP haplotype diversity in forensic analysis. Forensic Sci. Int. 2001;118:158–162
  5. Brion M, Sobrino B, Blanco-Verea A, Lareu MV, Carracedo A. Hierarchical analysis of 30 Y-chromosome SNPs in European populations. Int. J. Legal Med. 2005;119(1):10–15
  6. Paracchini S, Arredi B, Chalk R, Tyler-Smith C. Hierarchical high-throughput SNP genotyping of the human Y chromosome using MALDI-TOF mass spectrometry. Nucleic Acids Res. 2002;30:e27
  7. Brion M. Y chromosome SNP analysis using the single-base extension: a hierarchical multiplex design. Methods Mol. Biol. 2004;297:229–242
  8. Syvänen AC. Accessing genetic variation: genotyping single nucleotide polymorphisms. Nat. Rev. Genet. 2001;2:930–942
  9. Sobrino B, Brion M, Carracedo A. SNPs in forensic genetics: a review on SNP typing methodologies. Forensic Sci. Int. 2005;154:181–194
  10. Underhill PA, Shen P, Lin AA, Jin L, Passarino G, Yang WH, et al. Y chromosome sequence variation and the history of human populations. Nat. Genet. 2000;26:358–361
  11. Scozzari R, Cruciani F, Pangrazio A, Santolamazza P, Vona G, Moral P, et al. Human Y-chromosome variation in the western Mediterranean area: implications for the peopling of the region. Hum. Immunol. 2001;62:871–884
  12. Rosser ZH, Zerjal T, Hurles ME, Adojaan M, Alavantic D, Amorim A, et al. Y-chromosomal diversity in Europe is clinal and influenced primarily by geography, rather than by language. Am. J. Hum. Genet. 2000;67:1526–1543
  13. Cruciani F, Santolamazza P, Shen P, Macaulay V, Moral P, Olckers A, et al. A back migration from Asia to sub-Saharan Africa is supported by high resolution analysis of human Y-chromosome haplotypes. Am. J. Hum. Genet. 2002;70:1197–1214
  14. Semino O, Passarino G, Oefner PJ, Lin AA, Arbuzova S, Beckman LE, et al. The genetic legacy of Paleolithic Homo sapiens in extant Europeans: a Y chromosome perspective. Science. 2000;290:1155–1159
  15. Cinnioglu C, King R, Kivisild T, Kalfoglu E, Atasoy S, Cavalleri GL, et al. Excavating Y-chromosome haplotype strata in Anatolia. Hum. Genet. 2004;114:127–148
  16. Semino O, Magri C, Benuzzi G, Lin AA, Al-Zahery N, Battaglia V, et al. Origin, diffusion, and differentiation of Y-chromosome haplogroups E and J: inferences on the neolithization of Europe and later migratory events in the Mediterranean area. Am. J. Hum. Genet. 2004;74:1023–1034
  17. Allen RC, Graves G, Budowle B. Polymerase chain reaction amplification products separated on rehydratable polyacrylamide gels and stained with silver. Biotechniques. 1989;7:736–744
  18. Budowle B, Chakraborty R, Giusti AM, Eisenberg AJ, Allen RC. Analysis of the VNTR locus D1S80 by the PCR followed by high-resolution PAGE. Am. J. Hum. Genet. 1991;48:137–144
  19. Sanchez JJ, Borsting C, Hallenberg C, Buchard A, Hernandez A, Morling N. Multiplex PCR and minisequencing of SNPs—a model with 35 Y chromosome SNPs. Forensic Sci. Int. 2003;137:74–84
  20. Konrad KD, Pentoney SL. Contribution of secondary structure to DNA mobility in capillary gels. Electrophoresis. 1993;14:502–508
  21. Vallone PM, Just RS, Coble MD, Butler JM, Parson TJ. A multiplex allele-specific primer extension assay for forensically informative SNPs distributed throughout the mitochondrial genome. Int. J. Legal Med. 2004;118:147–157
  22. F. Alessandrini, C. Turchi, V. Onofri, L. Buscemi, M. Pesaresi, A. Tagliabracci, Multiplex PCR development of Y-chromosomal biallelic polymorphisms for forensic applications, J. Forensic Sci. 50 (3) (2005), in press.
  23. Sanchez JJ, Brion M, Parson W, Blanco-Verea AJ, Borsting C, Lareu M, et al. Duplications of the Y-chromosome specific loci P25 and 92R7 and forensic implications. Forensic Sci. Int. 2004;140:241–250

PII: S0379-0738(05)00159-3

doi: 10.1016/j.forsciint.2005.03.014

Forensic Science International
Volume 157, Issue 1 , Pages 23-35 , 10 February 2006

Article Tools

* Image Usage & Resolution